Begum Alaybeyoglu, Bilge Gedik Uluocak, Berna Sariyar Akbulut, and Elif Ozkirimli (2017). The effect of a beta-lactamase inhibitor peptide on bacterial membrane structure and integrity: a comparative study (2017). Journal of Peptide Science. Accepted: 31 January.

Dilara Ayyildiz, Kazim Yalcin Arga, Fatma Gizem Avci, Fatma Ece Altinisik, Caglayan Gurer, Gizem Gulsoy Toplan, Dilek Kazan, Katharina Wozny, Britta Brügger, Bulent Mertoglu, Berna Sariyar Akbulut (2017). Transcriptomic analysis displays the effect of (‑)‑roemerine on the motility and nutrient uptake in Escherichia coli. Current Genetics. DOI 10.1007/s00294-016-0673-4.

Nilay Budeyri Gokgoz, Fatma Gizem Avci, Kubra Karaosmanoglu Yoneten, Begum Alaybeyoglu, Elif Ozkirimli, Nihat Alpagu Sayar, Dilek Kazan, and Berna Sariyar Akbulut (2016). Response of Escherichia coli to Prolonged Berberine Exposure. Microbial Drug Resistance. DOI: 10.1089/mdr.2016.0063

Fatma Gizem Avci, Fatma Ece Altinisik, Didem Vardar Ulu, Elif Ozkirimli Olmez & Berna Sariyar Akbulut (2016). An evolutionarily conserved allosteric site modulates beta-lactamase activity. Journal of Enzyme Inhibition and Medicinal Chemistry. 31:sup3, 33-40.

Begum Alaybeyoglu, Berna Sariyar Akbulut & Elif Ozkirimli (2016). Insights into Membrane Translocation of the Cell-Penetrating Peptide pVEC from Molecular Dynamics Calculations, Journal of Biomolecular Structure and Dynamics, Journal of Biomolecular Structure and Dynamics. 17:1-12.

Öztürk HU, Sariyar Akbulut B, Ayan B, Poli A, Denizci AA, Utkan G, Nicolaus B and Kazan D (2015). Moderately Halophilic Bacterium Halomonas sp. AAD12: A Promising Candidate as a Hydroxyectoine Producer. J Microb Biochem Technol. 7(5), 262-268.

Nilay Büdeyri Gökgöz, Simay Yalaz, Naze Gül Avcı, Gizem Buldum, Elif Özkırımlı Ölmez, Berna Akbulut (2015). Investigation of the in vivo interaction between β-lactamase and its inhibitor protein. Turk J Biol. 39, 485-92.

Nilay Budeyri Gokgoz and Berna Sariyar Akbulut (2015). Proteomics Evidence for the Activity of the Putative Antibacterial Plant Alkaloid (-)-Roemerine: Mainstreaming Omics-Guided Drug Discovery. OMICS A Journal of Integrative Biology. 19(8), 478-89.

Begum Alaybeyoglu, Berna Sariyar Akbulut and Elif Ozkirimli (2015). A novel chimeric peptide with antimicrobial activity. Journal of Peptide Science. Volume 21(4), 294–301.

Kubra Karaosmanoglu, Nihat Alpagu Sayar, Isil Aksan Kurnaz, and Berna Sariyar Akbulut (2014). Assessment of Berberine as a Multi-target Antimicrobial: A Multi-omics Study for Drug Discovery and Repositioning. OMICS A Journal of Integrative Biology. 18: 1.

Ceylan S, Yilan G, Sarıyar Akbulut B, Poli A, Kazan D (2012). Interplay of adaptive capabilities of Halomonas sp. AAD12 under salt stress. Journal of Bioscience and Bioengineering, 114:1, 45-52.

Kamil Serkan Uzyol, Berna Sarıyar Akbulut, Aziz Akın Denizci, Dilek Kazan (2012). Thermostable alpha-Amylase from Moderately Halophilic Halomonas sp. AAD21. Turk J Biol. 36, 327-338.

Selim Ceylan, Berna Sarıyar Akbulut, Aziz Akın Denizci, Dilek Kazan (2011). Proteomic insight into phenolic adaptation of a moderately halophilic Halomonas sp. strain AAD12. Can. J. Microbiol. 57: 295 – 302.

Çağakan Ozbalci, Çağlayan Unsal, Dilek Kazan, Berna Sariyar-Akbulut. (2010). Proteomic response of Escherichia coli to the alkaloid extract of Papaver polychaetum. Ann. Microbiol. 60: 709 – 717.

Sarıyar-Akbulut, B. (2010). Discriminant Function Analysis Based on Principal Components for Rapid Discrimination of Metabolic Capabilities of New Isolates. Chemical and Biochemical Engineering Quarterly (CABEQ). Chem. Biochem. Eng. Q. 24(1): 119–127.

Özde F. Ütkür, Berna Sarıyar Akbulut, Amable Hortaçsu (2009). Cellular Distribution of Activity for Three Enzymes with Maltose Binding Protein as Fusion Partner and the Structural Implications. Turk J Chem. 33: 1 – 13.

B. Sarıyar-Akbulut (2009). Rapid Differentiation of New Isolates with MALDI-TOF Mass Spectrometry via Discriminant Function Analysis based on Principal Components. Korean Journal of Chemical Engineering. 26(6): 1645 – 1651.

Sarıyar-Akbulut, B., Dilgimen, A.S., Ceylan, S., Perk, S.,Kazan, D. (2008). Preliminary phenotypic characterization of newly isolated halophilic microorganisms by footprinting: a rapid metabolome analysis. Archives of Microbiology 189:16-29.

B. Sariyar, S. Perk, U. Akman, A. Hortacsu (2006). Monte Carlo sampling and principal component analysis of flux distributions yield topological and modular information on metabolic Networks. Journal of Theoretical Biology 242(2), 389-400.

P. Özkan, B. Sariyar , Ö. Utkur, U. Akman and A. Hortaçsu (2005). Metabolic Flux Analysis of Recombinant Protein Overproduction in Escherichia coli, Biochemical Engineering Journal, 22, 167-195.

B. Sariyar and A. Hortacsu (2004). Expression and translocation of glucose isomerase as a fusion protein in E. Coli, Enzyme and Microbial Technology, 35(2-3), 105-112.

B. Sariyar and A. Hortaçsu (2004). Mathematical Modeling of Sec Pathway Mechanism in Escherichia coli: A case study for periplasmic translocation of maltose binding protein-glucose isomerase fusion protein, Chemical Engineering Science, 59(5), 1027-1038.

San K-Y., Bennet, G.N., Berrios-Rivera, S.J., Vadali, R.V., Yang, Y.T., Horton E., Rudolph, F.B., Sariyar, B. and Blackwood, K., (2002). Metabolic Engineering through Cofactor Manipulations and Its Effects on Metabolic Flux Redistribution in Escherichia coli, Metabolic Engineering 4, 182-192.